Lec 1: From a clinical need to a monitored, accountable system
DGIN 5401 · Dalhousie University
This is a seminar and research course about a subtly difficult question:
What would have to be true for a machine-learning system to actually improve healthcare?
Clinical purpose
What care gaps, risks, or inefficiencies exist a priori?
Honest evidence What designs, comparisons, metrics, and measures of uncertainty must be applied?
What would be convincing? What wouldn’t be?
Sociotechnical fit
How do the model, interface, workflow, people, and incentives work together as one?
Lifecycle responsibility
How do we monitor, investigate, update, roll back, and retire when the context changes?
Seminar
Research Studio
Administrative details
Dates, assessment weights, communication channels, and current policies live in the syllabus and MS Teams. This deck concentrates on how to do the work well.
Small seminar
Discussion, peer teaching, and flexibility are (expected) features.
Research communication
Expect conference-style paper presentations, questions, and concise reflections.
Shared studio
Staged artifacts build toward rigorous project work, with clear individual ownership inside a collaborative theme.
Working record
Use MS Teams for communication and submitting checkpoints; keep code, sources, data decisions, and environments reproducible, shared on 🔗 GitHub.
Preparation is participation
Arrive ready to question, explain, and collaborate. Attribute ideas, text, figures, code, and data precisely to outside sources (including generative ones), and to each other.
Move through the argument
o opens the overview;A recurring learning rhythm:
Question → inspect → test → interpret
By the end of this course, you should be able to:
The standard
The aim is to be able to make decisions and claims with clear rationale.
Pause and discuss
Which lens is already closest to your expertise? Which lens will you deliberately practise this term?
🔗 AIRO is an initiative at our QEII hospital that explores dynamic risk assessment and outcome optimization in cardiac surgery, using the 🔗 Maritime Heart Centre Registry as a clinical-data resource.
What is shared
What remains open
What you will lead
Clinical case
An adult patient undergoes cardiac surgery. Information arrives across pre-operative assessment, the operating room, ICU, ward, discharge, and 30-day follow-up.
Our recurring outcome is 🔗 delirium (or, alternatively, surgical-site infection (SSI); see handouts), with related examples involving mortality, acute kidney injury, prolonged ventilation, readmission, and recovery.
The case is inspired by the AIRO cardiac-surgery project, but the patient, notes, and values in this deck are educational and synthetic.
Evidence
See guidance on reporting, risk-of-bias, early clinical evaluation, and lifecycle guidance such as TRIPOD+AI (Collins et al. 2024), PROBAST+AI (Moons et al. 2025), DECIDE-AI (Vasey et al. 2022), and FUTURE-AI (Lekadir et al. 2025).
Among adult cardiac-surgery patients, use information available by ICU transfer to estimate the probability of superficial surgical-site infection within 30 days, so that the postoperative team may consider enhanced surveillance and follow-up.
This is just a starting point. We’ll discuss and might pivot slightly through the class. Testing and re-evaluating whether the patients, timing, labels, actions, and evidence make sense is good; we want to be flexible, within reason.
🤔 Contribution idea
A useful project contribution may be to show that one of these choices has a strong statistical effect on another.
1 · Explore
Review the data and example contributions.
2 · Register
Enter up to three ranked interests—or propose a new question—in the pinned Research Topic Registry in MS Teams.
Due: 16 September
3 · Reconcile
We compare feasibility, scope, dependencies, coverage, and learning goals. Overlapping interests may become complementary questions.
17-18 September
4 · Confirm
Submit a one-page question card. Leadership becomes confirmed after feasibility and scope review.
With proposal: 21 September
Not ‘first come, first served’
All preferences received by the deadline are considered together. The aim is a fair set of feasible, complementary contributions—not a race to claim a broad topic.
One formal rescoping point follows the dataset-analysis checkpoint. A question may change when the data reveal a genuine feasibility problem; the reason and revised scope are recorded in the registry.
The question card identifies
Too broad
“Use deep learning for surgical-site infection.”
Claimable
“Does adding information from the first 12 ICU hours improve calibration of 30-day superficial-SSI risk beyond an end-of-surgery baseline, without temporal leakage or unacceptable missingness?”
“Which perioperative missingness patterns reflect clinical workflow, and how do they change apparent SSI-model performance?”
Leadership, not exclusivity
The named lead is accountable for moving the question forward and documenting the work. Shared data, infrastructure, reusable code, and adjacent scientific ideas remain shared; contributions and dependencies are recorded explicitly.
Proposal
Introduction, intended use, question, hypotheses, evidence plan, and feasibility risks.
Literature review
Related work, evidence map, strongest baselines, external validations, and the unresolved gap.
Dataset analysis
Cohort, labels, timing, provenance, missingness, event counts, synthetic-data limits, and split risks.
Methods
Preprocessing, baselines, models, resampling, uncertainty, experiments, and reproducible implementation.
Experiments and analysis
Results, calibration, error analysis, subgroup or temporal checks, comparisons, and interpretation.
Final paper and presentation
Abstract, discussion, limitations, operational implications, conclusion, code package, and oral defence.
Cumulative
Every checkpoint revises and extends the same manuscript. The final submission should read like one coherent research paper.
Individual scientific responsibility
Shared studio participation
The final report is individual
Collaboration is expected, but each student submits an independently authored paper with a distinct primary question or claim. Shared code, figures, analyses, and ideas must be attributed in the paper and contribution statement.
First, see if you can reconstruct the paper’s argument:
A strong seminar talk represents the authors fairly, 🕵️♀️ but then tests the work as hard as possible.
Clinical effect
Prioritize trials, strong observational designs, systematic reviews, guidelines, and safety evidence.
Prediction
Prioritize clearly defined cohorts, temporal or external validation, calibration, decision analysis, and useful comparators.
Technical method
Prioritize sound assumptions, ablations, reproducibility, robustness, and comparison with credible baselines.
Implementation
Prioritize prospective, silent, workflow, human-factors, economic, and post-deployment evaluations.
Do not substitute prestige for appraisal
The venue helps identify the audience and review culture. It does not make the study design valid or the conclusion portable.
| Layer | Useful starting points | What it is good for |
|---|---|---|
| clinical / biomedical | 🔗 PubMed, MEDLINE, Cochrane, guideline repositories | clinical terminology, indexed study designs, reviews, trials |
| citation graph | 🔗 OpenAlex, 🔗 Semantic Scholar, 🔗 Google Scholar, Scopus / Web of Science | cited-by trails, related work, authors, venues, newer papers |
| ML / computing | 🔗 PMLR, 🔗 OpenReview, ACM Digital Library, IEEE Xplore, DBLP | conference papers, methods, reviews, technical lineage |
| health-ML venues | 🔗 MLHC, 🔗 CHIL, 🔗 ML4H, AMIA | work written for mixed clinical, informatics, and ML audiences |
| protocols and operations | 🔗 ClinicalTrials.gov, WHO ICTRP, regulators, standards bodies | registrations, prospective plans, implementation, governance |
| preprints and artifacts | 🔗 arXiv, 🔗 medRxiv, 🤗 huggingface, repositories, dataset / model cards | early work, code, data provenance, missing details, and version history |
Approach from at least two disciplines
For this course, search both biomedical and technical sources. Their coverage, goals, and vocabulary differ.
This is not a ranking, but the higher-impact the venue, the more likely the work is to be good.
Clinical and specialty journals
Clinical importance, patient populations, comparative evidence, safety, and validation.
Examples: specialty journals, The Lancet Digital Health, NEJM AI, Nature Medicine, npj Digital Medicine.
Biomedical informatics
Health data, decision support, implementation, terminology, workflow, and learning health systems.
Examples: JAMIA, Journal of Biomedical Informatics, AMIA proceedings.
ML specifically for health
Methods, evaluation, impact, and deployment at the clinical–technical boundary.
Examples: MLHC, CHIL, ML4H.
General ML and human factors
Foundational methods, causal inference, robustness, fairness, interfaces, and collaborative work.
Examples: NeurIPS, ICML, ICLR, AISTATS, CHI, CSCW.
Not all papers deserve a deep dive.
Relevance screen
Credibility screen
Do not cite a summary as though you read the study
Search snippets, generated summaries, abstracts, and review articles help with triage. Verify consequential claims in the original paper and its supplements.
Use a shared reference manager (e.g., 🔗 Zotero) or DIY.
Possible collections
00 · inbox10 · clinical background20 · prediction and evaluation30 · implementation and monitoring40 · project-specific evidence90 · seminar papersAdapted from 🔗 Keshav’s three-pass approach.
Pass 1 · triage
About 5–10 minutes.
Read title, abstract, introduction, headings, conclusion, figures, and references. Decide relevance, category, context, contribution, and apparent assumptions.
Pass 2 · reconstruct
Roughly 30–60 minutes.
Follow the argument, inspect every figure and table, mark unclear claims, and write a short summary in your own words. Be curious here.
Pass 3 · audit
Only for central or presented papers.
Read methods, supplement, protocol, code, and linked studies closely. Be more critical here. Reconstruct or reproduce a key calculation, figure, cohort flow, or comparison where feasible. Find what they did wrong or left unsolved.
By the end, the audience should understand:
Fair first, critical second
Present the strongest defensible version of the authors’ argument before giving your assessment.
A rough (though not required) timeline might be:
| Time | Purpose | What belongs on the slides |
|---|---|---|
| 0:00–5:00 | hook and question | the care or scientific problem; one-sentence paper claim |
| 5:00–10:00 | minimum background | only concepts the mixed audience needs |
| 10:00–12:00 | data and design | cohort, index time, outcome, split, comparator |
| 12:00–18:00 | method | enough to understand the evidence—not an implementation manual |
| 18:00–22:00 | results | one or two legible figures; effect size / uncertainty / calibration |
| 22:00–25:00 | critique | strongest contribution, claim boundary, secret terrible thing |
| 25:00–30:00 | synthesis | transferable lesson and discussion question |
Prepare backup slides for definitions, extra methods, subgroup results, and likely questions.
A useful question ladder
The presenter’s job
The audience also has a job
Everyone: Arrive having read enough to ask a genuine question, connect the paper to prior weeks and current work, and help interrogate the work.
Diabetic eye screening is recommended for young people with diabetes, but a referral often requires a second appointment. ACCESS tested whether an autonomous eye examination during the diabetes visit could close that care gap. (Wolf et al. 2024)

completed in the referral-plus-education control arm.
completed in the point-of-care autonomous-AI arm.
Primary outcome
Completion of recommended screening—not AUROC.
Wolf et al. (2024), Fig. 1, reproduced under CC BY 4.0. (Wolf et al. 2024)
Referral pathway
Point-of-care pathway
The intervention bundled co-location, image acquisition, autonomous interpretation, an immediate result, education, and referral when indicated.
Defensible claim: the bundled pathway increased screening completion in this trial.
Not established: which component caused how much of the effect, or whether long-term visual outcomes improved.
Question
Was the algorithm the intervention, or did the algorithm enable the intervention?
🔗 Sepsis is common, time-sensitive, and potentially actionable. The Epic Sepsis Model was already implemented at 100s of US hospitals when independent external validation reported much weaker performance than expected. (Wong et al. 2021)

Hospitalization-level AUROC: 0.63
At the operational threshold \(\mathrm{ESM}\geq 6\):
Lifecycle mistake
Neither availability inside the EHR nor preponderance is independent evidence of clinical value.
Wong et al. (2021), Fig. 1. (Wong et al. 2021)
At the same threshold, the model:
of hospitalizations crossed the threshold at least once.
of sepsis hospitalizations were not identified.
of sepsis hospitalizations crossed the threshold without timely antibiotics already given—the study’s potential incremental-detection group.
If clinicians repeatedly evaluated alerts for sepsis in the next four hours, the study estimated 109 evaluations for one patient with sepsis. (Wong et al. 2021)
The real comparison
A clinical model should be compared with contemporary care and evaluated in terms of added information, timing, workload, and consequences.
Target mistake
The model optimizes the target correctly, but the target is not the clinical purpose.
Benchmark mistake
Performance in a curated dataset, vignette, or simulation is treated as performance in use.
Metric mistake
A summary score is treated as sufficient evidence for a decision and workload.
Lifecycle mistake
A deployed model is treated as stable, validated, and finished.
These four mistakes will recur throughout the class. See if you can spot them!
Machine learning can support diagnosis, prognosis, triage, documentation, monitoring, and operations.
It can also introduce new failure modes, shift work, obscure accountability, or scale inequity. (Wiens et al. 2019; Cabitza, Rasoini, and Gensini 2017)
Clinical case
The relevant comparison is rarely “AI versus perfection” (or it shouldn’t be), but instead the proposed human–technology workflow versus the current workflow, including the risks of doing nothing.
Healthcare decisions are made under uncertainty, time pressure, incomplete records, changing evidence, human fallibility and constrained resources.
A useful system must therefore connect:
The field goes beyond model accuracy in the lab to also include socio-technical performance.
Clinical documentation and coordination burdens matter, but “AI will reduce burnout” is not a sufficient hypothesis (Seth, Carretas, and Rudzicz 2024).
Ask instead:
Legacy evidence on physician burnout and empathy remains useful context, while modern evaluation must measure the actual workflow. (Shanafelt et al. 2015; Riess et al. 2012; Beede et al. 2020)
Clinicians combine imperfect information:
Models also operate on imperfect inputs, but their errors can be systematic, difficult to notice, and repeated at scale.
Before modelling, inspect the bottleneck.
A non-ML intervention may be better when the problem is:
ML becomes plausible when:
ACCESS is instructive because the AI enabled a bundled point-of-care pathway that helped. The trial establishes the effect of that bundle, not just the algorithm in isolation.
| Model output | Decision question |
|---|---|
| 18% SSI risk | Is enhanced monitoring worthwhile? |
| ranked differential | Which diagnoses should be investigated next? |
| predicted length of stay | How should beds and staffing be planned? |
| generated discharge summary | Is the content accurate, complete, and safe to sign? |
| deterioration alert | Who responds, by when, with what protocol? |
Pause and discuss
A model output has no clinical value until it is connected to an action, resource, and accountable user.
Three questions often get confused:
Warning
A predictive feature can be useful without being causal. A causal factor may be hard to predict. A post-hoc explanation may not reveal the true mechanism.
Risk
Changing the intended use after seeing model performance is a form of 🔗 outcome-driven design.
(See Section 4.0.5).
Cardiac surgical-site outcomes can differ by tissue depth, anatomic site, surveillance period, and evidence used to establish the event. Current surveillance protocols should anchor definitions and adjudication. (Centers for Disease Control and Prevention 2026)
Potential targets include:
Pause and discuss
A clinically meaningful target can still be unsuitable if ascertainment is inconsistent or follow-up is incomplete.
| Task | Example output | Typical evaluation |
|---|---|---|
| Classification | SSI within 30 days: yes/no | sensitivity, specificity, AUROC, AUPRC |
| Risk estimation | 0.18 probability | calibration, Brier/log loss, utility |
| Ranking | prioritized follow-up list | precision at k, workload, capture rate |
| Regression | predicted ICU hours | MAE/RMSE, calibration of intervals |
| Survival | infection-free probability over time | C-index, time-dependent calibration |
| Trajectory | evolving risk across pathway | dynamic discrimination/calibration |
| Generation | summary or recommendation text | factuality, completeness, harm, workflow |
🔗 Static-vs-dynamic prediction basically refers to whether the predictions are done ‘offline’ (often in batches) or ‘online’ (often on demand).
Model principle
Dynamic prediction is not simply “add more variables.” It requires clear landmark times, time-varying availability, repeated-measure handling, and evaluation that respects time.
Randomized trials estimate effects of interventions under defined conditions.
Prediction-model studies estimate how well outcomes can be forecast in a target population or scenario.
A prediction system may ultimately need several forms of evidence:
Reporting frameworks distinguish these stages rather than treating one held-out test set as completion. (Vasey et al. 2022; Liu et al. 2020; Rivera et al. 2020)
| Claim | Evidence that begins to support it |
|---|---|
| The model distinguishes outcomes | held-out discrimination with uncertainty |
| Predicted risks are meaningful | calibration and proper scoring rules |
| It travels to another setting or time | temporal or geographic external validation |
| People can use it safely | usability and human-factors evaluation |
| It changes care | prospective workflow or comparative impact evaluation |
| It improves patient outcomes | an impact design appropriate to the intervention, sometimes randomized |
| It remains safe | monitoring, incidents, change control, and retirement criteria |
No single study proves ‘the system works’
Different claims require different evidence.
A team proposes:
“We will use AI to reduce surgical-site infection after cardiac surgery.”
1 · Need: What current care gap are they trying to change?
2 · Intended use: Who, when, what outcome, what horizon, and what action?
3 · Non-ML alternative: What process or measurement repair should be considered first?
4 · Claim: What is the smallest claim the first study could honestly support?
5 · Failure: Which of the four category mistakes is most likely?
One reasonable first goal may be:
Among adult cardiac-surgery patients at ICU transfer, estimate 30-day superficial-SSI risk using information available by that time, and evaluate whether the estimate is sufficiently calibrated and timely to justify a later prospective study of enhanced surveillance.
This does not yet claim that:

DGIN 5401 · Operationalized ML in Healthcare